From Birdsong Metrics to Ancient Arctic DNA: Selected Publications from the 1st Quarter, 2014

In the first quarter of 2014, researchers at The Environment Institute have published on a vast array of topics, from Ancient DNA in the Arctic, to birdsongs to  recommendations for improvements to guidelines such as the Ecological Footprint in order to better inform policy makers.

A selection of these publications is listed below.

1. Fifty thousand years of Arctic vegetation and megafaunal diet. Nature
Research into the type of vegetation present during the last 50 thousand years in the Arctic is presented. Rather than using fossilised pollen as the main source of data as has been the case for previous studies, this study used plant and nematode DNA from sites across the Arctic. This data brings into question the diet of megafauna such as the woolly mammoth.

2. Distribution and Diversity of Soil Microfauna from East Antarctica: Assessing the Link between Biotic and Abiotic Factors. PLOS ONE
An investigation into soil microfauna composition, abundance, and distribution in East Antarctica. The study found that where a population exists is likely to be determined by soil geochemistry.

3. Higher Levels of Multiple Paternities Increase Seedling Survival in the Long-Lived Tree Eucalyptus gracilis. PLOS ONE
Data from populations of Eucalyptus gracilis (white mallee or yorrell) across the Murray-Darling Basin in southern Australia was collected in order to gain an understanding of how local environments affect seed quality.

4. Rapid deforestation threatens mid‐elevational endemic birds but climate change is most important at higher elevations. Biodiversity Research
The effect of deforestation and climate change on bird communities in Lore Lindu National Park, Sulawesi, Indonesia was investigated. The National Park is a globally important hotspot of avian endemism, and has lost almost 12% of its forest in the decade of 2000-2010.

5. Does the Shoe Fit? Real versus Imagined Ecological Footprints. PLOS BIOLOGY
This article seeks to demonstrate that “Ecological Footprint” measurements as currently constructed and presented misleading and cannot be used effectively in any serious science or policy context. Outlined are a set of principles that any ecological indicator should be based on in order to be scientifically sound and relevant for use in decision making.

6. Historical changes in mean trophic level of southern Australian fisheries. Marine and Freshwater Research
It is suggested that care in interpretation of mean trophic level (MTL) of catches should be taken because reductions do not necessarily reflect change in species high on the food chain by fishing pressure. They found that the change in MTL is mainly attributable to large catches of sardines.

7. Ecology Needs a Convention of Nomenclature. BioScience
A convention of ecological nomenclature as well as a transnational institution to manage it is proposed, in order to overcome the synonymy and polysemy across disciplines, which currently handicaps the progress of ecology.

8.Emerging Challenges for the Drinking Water Industry Environmental Science & Technology
Three principles that underpin alternative water source choices are introduced: Reliability, thresholds and future projections of water quality and quantity.

9. The evolution of lncRNA repertoires and expression patterns in tetrapods. Nature
The first large-scale evolutionary study of long noncoding RNA (lncRNA) repertoires and expression patterns in eleven tetrapod species is presented. About 400 highly conserved lncRNA’s (of more than 10 000 identified) probably originated an astonishing 300 million years ago at least.

10. Direct evidence for organic carbon preservation as clay-organic nanocomposites in a Devonian black shale; from deposition to diagenesis Earth and Planetary Science Letters
The temperature and oxygenation of the oceans are influenced by one of the most fundamental biogeochemical processes on Earth-the burial of organic carbon in marine sediments. This buried organic carbon also comprises the primary source of hydrocarbons. This paper presents research into the composition of Woodford Shale.

11. A guide to southern temperate seagrasses (Book, CSIRO Publishing)
A reference guide to the diverse seagrasses present in the ocean of the temperate parts of the southern hemisphere. Evolution, biology and ecology of the seagrasses is introduced. This book allows readers to rapidly identify a particular species, including those often confused with others.

12. A Potential Metric of the Attractiveness of Bird Song to Humans. Ethology
Bird species such as the common nightingale and European blackbird have songs that are known to have inspired classical music. Developing a metric for these songs might help identify birds that are present in international bird trade which could contribute to studies of invasion and conservation biology.

13. Genetics in conservation management: Revised recommendations for the 50/500 rules, Red List criteria and population viability analyses. Biological Conservation
A review of recent theoretical and empirical evidence concludes that the population rules for minimising inbreeding and for maintaining evolutionary potential in perpetuity need to be at least doubled and sections of the IUCN Red List criteria require revision, to be more effective conservation tools.

Animal Armageddon scientist descends on Adelaide. Welcome to Peter Ward.

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Peter Ward. Source: Nautilus Magazine

You may come to the conclusion that the research of Peter Ward is somewhat fatalistic. He did after all, coin the term Medea Hypothesis, which proposes that multicellular life as we know it is suicidal. However, the very poison of complex life may also be able to save it.

Showcased in his TED talk, Peter tells a story of the mass extinctions of Earth’s past in contrast to the plot of Hollywood blockbusters Deep Impact and Armageddon.

He proposes that many of the mass extinctions or “Animal Armageddons” of Earth’s history have been caused not by the impact of extraterrestrial bodies, but by bacteria.

Rapid global warming causes oceans to become depleted in oxygen, which allows buildup of a gas poisonous to complex life, hydrogen sulfide (H2S). Bacteria on the other hand thrives on H2S, and so its domination of the planet is abetted.

As it turns out, the hydrogen sulfide poison present at the boundary of these mass extinctions may actually have a medical application to sustain human life. Not all mammals were wiped out during the mass extinctions of the past, or you wouldn’t be here reading this. Those that survived underwent an adaptation to cope with small amounts H2S due to the series of exposures to high atmospheric hydrogen sulfide they experienced.

Hydrogen Sulfide may be used to facilitate lowering of core body temperature following trauma, to allow time for transport to hospital. Understanding Earth’s history provides an opportunity to revolutionise medicine.

Peter Ward’s work to uncover the secrets of Earth’s mass extinctions has been profiled in internet think tank BigThink.comand inspired the Discovery Channel documentary Animal Armageddon.

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Peter Ward diving at Osprey Reef, off the Great Barrier Reef. Source: Nautilus Magazine

This is research immersed in philosophy, that extends to the depths of the oceans. Work conducted with such passion and creativity is often sparked from a childhood experience. And so it is with Peter Ward.

In his surprisingly emotive piece in about a creature for a magazine of the same name, the Nautilus, Ward tells the story of a career researching a creature that has prevailed for 500 million years. It began with his entrancement with the Nautilus shell after first seeing one in a shell shop in Hawaii as a young boy. It ended, albeit temporarily, with the tragic death of a friend on a diving expedition in New Caledonia.

Ward visited Adelaide late last year to give a presentation concerning specific new data coming from research into the K/Pg mass extinction at field sites in Antarctica, the late Devonian mass extinction based on work just finished in the Canning Basin of Australia, and the Permian mass extinction from new work in both South Africa and Western Canada. He is now working at School of Earth and Environmental Sciences the University of Adelaide.

In a video interview for Nautilus magazine in answer to the question “What is your proudest achievement as a scientist?” Peter Ward muses “that I have been able to instill in students that it [science] is FUN.

Our guess is that students are in for a real treat. The Environment Institute welcomes Peter Ward!

Quenching the curiosity of everyday Australians.

Environment Institute members Corey Bradshaw and Barry Brook were part of a hand-picked group of 27 academic experts and science writers from across Australia who contributed to a very interesting publication released late last year by the Chief Scientist of Australia.

The Curious Country

The book, available for download as a pdf or to e-readers is entitled “The Curious Country“. This collection of essays is the result of asking Australians directly what were the important issues that they wanted science to address.

What were their concerns about science? What inspires them? 1186 Australians were surveyed, men and women ages 18 to 65, from all education levels and locations around Australia. Climate along with heath issues topped the list for 30% and 32% of Australians, respectively. Pollution and water were the environmental issues of greatest concern.

The book is designed to bridge the gap between heavy scientific papers for specialists, and those wanting more accurate, up-to-date information about science than what currently filters through the mainstream media.

There is no need to read the book from start to finish. Flip and flick until you find a story that piques your curiosity. Perhaps there is some scientific phenomena that you always wondered about, but haven’t yet come across a reliable and accessible source.

"Powering the Future" by Barry Brook

“Powering the Future” by Barry Brook

 

Barry Brook explains in his contribution Powering the Future that Australia must use science and technology innovations to move away from a dependence on coal and seek lower carbon alternatives.  Brook notes that: “Australia has been a world leader in the development of lower-cost and more-efficient crystalline solar photovoltaics” and support for this type of research should continue. Along with this, he urges Australia to embrace the exploration of new frontiers such as engaging in multi-lateral collaborations- he uses the large hadron collider project as an example.

 

 

"Biowealth: all creatures great and small" by Corey Bradshaw

“Biowealth: all creatures great and small” by Corey Bradshaw

 

In Biowealth: all creatures great and small, Corey Bradshaw explains how all people depend on absolutely every other species for their own survival. Take for example the very air we breathe every day, which is provided to us free of charge by other species, mostly plants and marine algae. Biodiversity is extremely important to the human race, and yet it is being lost at an alarming rate. Corey discusses his involvement in the project on his own blog ConservationBytes.com.

Biosecurity research positions available

We are currently seeking two individuals for a Research Assistant position and a Research Associate position. These positions are ARC funded positions in ‘Transport risk pathways for emerging invasive species’.

  •  Research Assistant within the School of Earth & Environmental Sciences, University of Adelaide, Invasion Ecology Group (http://www.cassey-invasion-ecology.org/).
    The successful applicant will be expected to engage with researchers in the School of Earth & Environmental Sciences as well as fostering ties with other research providers, industry risk creators, and State Government end-users. The successful applicant will work closely with researchers in the Invasion Ecology Group providing empirical support for projects relating to transport networks and incursion risk. Research will include the collation of empirical data from Australian (and international) biosecurity datasets, the visualisation of spatial data, and the curation of digital project meta‐data.
  • Research Associate within The School of Mathematical Sciences and the School of Earth and Environmental Sciences.
    The successful candidate will work within the Operations Research Group of the School of Mathematical Sciences. The Operations Research Group consists of a number of leading mathematical modellers, with particular strengths in stochastic modelling and optimisation, and hosts a node of the ARC Centre of Excellence for ‘Mathematical and Statistical Frontiers of Big Data, Big Models, New Insights’, which shares strong links with this advertised position. Research will include the construction of complex pathway transport models supported by existing biosecurity datasets and the predictive mapping of ecologically-realistic environmental and climatic risk neighbourhoods. Computational and mathematical techniques will be used to forecast probabilities of future incursion risks into Australia.The successful applicant will also work closely with researchers in the Invasion Ecology Group, in the School of Earth and Environmental Sciences (http://www.cassey-invasion-ecology.org/), and will be expected to foster ties with other research providers, industry risk creators, and State Government end-users.

Closing date for these positions is Monday 17th March.

Spencer Gulf Ecosystem & Development Initiative Workshops

Workshops to discuss the progress on the Spencer Gulf Ecosystem and Development Initiative (SGEDI) are being conducted in regional areas and Adelaide over the next four weeks.

This is a four year program, led by the Environment Institute at the University of Adelaide. The program aims to provide all stakeholders with access to independent and credible information. We seek to enable positive environmental decision making for groups and individuals associated with the Gulf.

Cumulative Impact and the Spencer Gulf System

Cumulative Impact and the Spencer Gulf System

Workshop locations:

·         Port Augusta – Tuesday 18 February – Charles Chappell room, Standpipe Golf Motor Inn, Corner Eyre and Stuart Highways from 1.30pm until 4.30pm

·         Whyalla – Tuesday 11 March  – Training Room, Whyalla Library, 7-9 Ekblom Street from 1.00pm until 4.30pm

·         Wallaroo – Tuesday 25 February – Supper Room, Wallaroo Town Hall, Section 1634 Irwine St from 1.00pm until 4.30pm

·         Port Lincoln – Wednesday 26 February – Lecture Theatre, Lincoln Marine Science Centre, 1 Hindmarsh St from 1.00pm until 4.00pm

·         Adelaide – Friday 7 March – Seminar Room West, Masonic Hall, North Terrace TBC.

The aim of these workshops is to discuss the work that has been undertaken in the last twelve months. This includes:

  • a summary of the findings from the last series of stakeholder workshops that were conducted at the end of 2012
  • a review of the scientific knowledge about the Spencer Gulf’s marine environment
  • an assessment of key knowledge gaps
  • pathways for the next period of research

Download the Spencer Gulf Ecosystem and Development Initiative Summary (PDF)

In order to cater, we would be pleased if you could RSVP with your chosen location before 14 February by email to clair.crowley@adelaide.edu.au

Feel free to contact the Environment Institute for more information on (08) 8313 0543.

TED Speaker and “Drones Ecologist” Lian Pin Koh joins the Environment Institute

His research has been featured in National Geographic, presented at TED Global 2013, named by Scientific American as in the Top 10 of “World Changing Ideas” and has been listed in the Nominet Trust “100 of the World’s Most Inspiring Social Innovations” list.

So it is no surprise that the Environment Institute is very excited to welcome Lian Pin Koh in 2014!

Founder of the non-profit ConservationDrones.orgLian Pin has shared his research at TED Global 2013 in a talk entitled “A drone’s-eye view of conservation”.

So what exactly is a “Conservation Drone“?  Essentially model planes that can be equipped with a camera and sensing equipment, these drones can be programmed to fly over wildlife zones previously difficult or too costly to reach. To use Lian Pin’s words, they are “the ultimate boy’s toy”. He has even had his share of detractors, claiming that they were just “fooling around with toy planes”.

As the accolades suggest, these are no ordinary toy planes. They are currently being used in Nepal in the fight against wildlife crime, in North Sumatra to monitor the number of orangutan nest in a remote rainforest, and to keep an eye on deforestation as a result of the growth of palm oil plantations.

Looking ahead, there is enormous potential for the drones to be used in conjunction with radio collar trackers for monitoring of endangered animal populations, or for collection of images from remote cameras via WiFi.

In short, they are a “game-changer for conservation research and applications”.

Lian Pin commences as Associate Professor with the School of Earth and Environmental Sciences this week at the University of Adelaide. Welcome Lian Pin, we look forward to following your exciting research!

The second industrial transformation of Australian landscapes.

Australian Rural Landscape - Flickr/dioshotspot

Australian Rural Landscape – Flickr/dioshotspot

Inarguably colonisation and industry have changed Australia’s environment since the first fleet set foot on NSW in the late 18th Century. This first industrial age was built on natural capital, driven by the need to populate and establish, with unprecedented changes to the natural environment.  In some cases we have exceeded environmental and resource limits, a scenario echoing across the world.

A new paper, co- authored by Wayne Meyer from the Environment Institute suggests we are moving through a second industrial transformation of Australian landscapes. Wayne and his co authors examine six emerging economies driving change in the Australian landscape; water, carbon, food, energy, amenity and mining.

These emerging economies could result in positive or negative transformations of Australia and the paper delves into some of partnerships and decisions we face as a nation to ensure a positive outcome. This includes forming new partnerships between government, science, the private sector and communities, supported by renegotiated institutional settings and governance. Science has a pivotal role in getting the information we need to make these deicisions and supporting effective strategies for positive change.

The paper is wide ranging in its scope, looking at local impacts and communities to generation- and nation-wide changes in how the country manages economies, environments and society. Overarching is the need to adapt to climate change and the global changes it will force in the absence of immediate and deep cuts to carbon emissions. The authors provide  potential pathways to move forward, citing the need for vision and the power it provides towards solving these complex multidisciplinary problems.

The full paper is accessible here.

Brett A Bryan, Wayne S Meyer, C Andrew Campbell, Graham P Harris, Ted Lefroy, Greg Lyle, Paul Martin, Josie McLean, Kelvin Montagu, Lauren A Rickards, David M Summers, Richard Thackway, Sam Wells, Mike Young, “The second industrial transformation of Australian landscapes”, Current Opinion in Environmental Sustainability, Available online 24 June 2013, ISSN 1877-3435, http://dx.doi.org/10.1016/j.cosust.2013.05.011.

TEDx Adelaide Forum 4 May 2013

Environment Institute member Alan Cooper will be speaking at this year’s TEDx Adelaide forum on Saturday 4 May 2013.TEDx 2013

TEDx is a ideas forum and this year’s theme is Explore. Some of the brightest minds in the state will be discussing what it means to explore, what we explore and why.

Where: Bonython Hall, 231-232 North Terrace, Adelaide
When: Saturday 4 May 2013
Time: 12pm-6pm
Cost: $65 + booking fee

Speakers

Session 1

Will Tamblyn & Gavin Smith: Open Volumetric: 3D holographic visualisation. Building a robot with a holographic head, before holographic projectors existed.

Kiera Lindsey: Lecturer in Australian History & Australian Studies, University of South Australia: Exploration tropes. How tropes of expectation and approach, discovery and disappointment, mystery and knowing are inherent to the concept of exploration.

Lucas Lovell: Exploring the Gobi Desert. Being forced to explore personal capacity and connect with the natural world in one of the world’s most stimulating environments.

Alan Cooper: Australian Centre for Ancient DNA: Using ancient DNA to track the impacts of human evolution on our bacteria and our health.

Kirsty Stark: Wastelander Panda: Exploring Opportunities Online.

Moira Deslandes: Resignation. Lessons from the inside, exploring the frontier of resignation.

Session 2

Larissa McGowan: Choreographer

Mike Lee: SA Museum: Technological change and alien encounters: Lessons from the fossil record. What will our world be like 100 years from now? What will aliens look like? The history of life on earth, as preserved in the fossil record, provides some disconcerting answers.

Peter Burdon: University of Adelaide, Wild Law. Law perpetuates the ecological crisis and needs to be radically reconfigured to facilitate a viable human presence on the Earth.

Travis TJ Ransom: Parkour

Sarah Agnew: On grace and humanity. The gift of story is an invitation into grace and healing, as we explore the human experience together.

Session 3

Drinks in Mezzanine at Hub Central

 

More information on the speakers can be found on the TEDx Adelaide homepage.

To find out more about the event see the TEDx event page.

To buy tickets visit the TEDx order page.

ARC Information Session: Discovery Projects & Discovery Early Career Researcher Awards 2014

The University of Adelaide’s Research Branch are holding an ARC Discovery Projects and Discovery Early Career Researcher Award information session. This is a great opportunity to learn more about the ARC Discovery Projects and Discovery Early Career Researcher Award grants schemes. The guest presenter will be Professor Gus Nathan, Director, Centre for Energy Technology.

When: Thursday, 31st January 2013

Time: 12.30pm – 2pm

Where: Napier Building, LG29 (Lower Ground)

RSVP: Please rsvp to arcgrants@adelaide.edu.au with “ARC Info Session” in the subject line of your email.

Professor Bob Hill named as finalist in this year’s The Australian Innovation Challenge Awards

Executive Dean of the Faculty of Sciences and Environment Institute Acting Director Professor Bob Hill has been named by The Australian newspaper as a finalist in this year’s The Australian Innovation Challenge Awards.

Professor Bob Hill

The Australian Innovation Challenge is a national search for the country’s greatest ideas in fields from environmental science to education. Run by The Australian in association with Shell, with the support of the Commonwealth Department of Industry, Innovation, Science, Research and Tertiary Education, the awards have seven professional categories, each carrying a prize of $5000. The overall winner will receive a further $25,000.

Professor Hill was named a finalist in the Education category for his leadership of a range of improvements to the first-year science program at the University of Adelaide. The program known as ‘Enhanced Learning in First-Year Sciences’ focuses the curriculums on 10 big questions and has resulted in recruitment and retention rates in undergraduate science courses increasing.

Congratulations are awarded to Professor Hill and good luck when the winner is announced on 11 December in Sydney.

Read the full media release

Find out more about the Australian Innovation Challenge Awards